ABIM GI study materials
ABIM GI study resources

ABIM GI key terms

ABIM GI · Get comfortable with the vocabulary.

Barrett esophagus

Replacement of the normal squamous lining of the distal esophagus by intestinal-type columnar mucosa with goblet cells, developing as a complication of chronic gastroesophageal reflux and carrying an increased risk of esophageal adenocarcinoma.

Related: Gastroesophageal reflux disease, Esophageal adenocarcinoma, Dysplasia
Gastroesophageal reflux disease

Condition in which reflux of gastric contents into the esophagus produces troublesome symptoms or mucosal injury; diagnosed by typical symptoms, response to acid suppression, or ambulatory pH monitoring when presentation is atypical.

Related: Barrett esophagus, Erosive esophagitis, Esophagogastroduodenoscopy
Erosive esophagitis

Endoscopically visible breaks in the esophageal mucosa caused by acid reflux, graded by severity (Los Angeles classification); its presence confirms reflux disease and predicts risk of stricture and recurrence.

Related: Gastroesophageal reflux disease, Peptic stricture
Achalasia

Primary motility disorder with failure of lower esophageal sphincter relaxation and absent esophageal peristalsis, presenting with progressive dysphagia to solids and liquids, regurgitation, and weight loss; diagnosed by manometry.

Related: High-resolution esophageal manometry, Pseudoachalasia, Esophagogastroduodenoscopy
High-resolution esophageal manometry

Catheter-based study measuring pressure and coordination along the esophagus with closely spaced sensors, using the Chicago Classification to define motility disorders such as achalasia, absent contractility, and esophagogastric junction outflow obstruction.

Related: Achalasia, Esophagogastric junction outflow obstruction
Pseudoachalasia

Secondary cause of achalasia-like manometric findings, usually from malignant infiltration at the esophagogastric junction (for example gastric or distal esophageal cancer), suggested by short symptom duration, older age, and marked weight loss.

Related: Achalasia, Esophageal adenocarcinoma
Esophagogastric junction outflow obstruction

Manometric pattern of impaired relaxation of the esophagogastric junction with preserved peristalsis, which may reflect mechanical obstruction, medication effect, or an early achalasia variant and requires clinical correlation and endoscopic evaluation.

Related: High-resolution esophageal manometry, Achalasia
Peptic stricture

Fibrotic narrowing of the distal esophagus from chronic acid injury, causing progressive solid-food dysphagia; treated with endoscopic dilation plus acid suppression, with biopsy to exclude malignancy when features are atypical.

Related: Erosive esophagitis, Gastroesophageal reflux disease
Eosinophilic esophagitis

Immune-mediated, antigen-driven disease producing esophageal eosinophilia, dysphagia, and food impaction, often with rings or furrows; treated with proton pump inhibitors, swallowed topical steroids, or dietary elimination.

Related: Dysphagia, Proton pump inhibitor
Helicobacter pylori infection

Chronic gastric bacterial infection causing antral-predominant gastritis, peptic ulcer disease, and distal gastric cancer or mucosa-associated lymphoid tissue lymphoma; diagnosed by urea breath test, stool antigen, or biopsy and treated with guideline-based eradication regimens.

Related: Peptic ulcer disease, Gastric adenocarcinoma, Mucosa-associated lymphoid tissue lymphoma
Peptic ulcer disease

Mucosal defect extending through the muscularis mucosae of the stomach or duodenum, most often caused by Helicobacter pylori or nonsteroidal anti-inflammatory drugs and complicated by bleeding or perforation.

Related: Helicobacter pylori infection, Nonsteroidal anti-inflammatory drug enteropathy
Gastric adenocarcinoma

Malignant tumor of gastric epithelium, classified as intestinal or diffuse type; risk factors include Helicobacter pylori, atrophic gastritis, smoking, and hereditary syndromes, and stage determines endoscopic resection versus surgery and chemotherapy.

Related: Helicobacter pylori infection, Hereditary diffuse gastric cancer, Endoscopic submucosal dissection
Mucosa-associated lymphoid tissue lymphoma

Low-grade B-cell lymphoma of the stomach arising in the setting of chronic Helicobacter pylori gastritis; early localized disease often regresses with eradication therapy alone, with chemotherapy or radiation reserved for nonresponders.

Related: Helicobacter pylori infection, Gastric adenocarcinoma
Celiac disease

Immune-mediated enteropathy triggered by dietary gluten, causing villous atrophy and malabsorption; diagnosed by positive tissue transglutaminase IgA with confirmatory duodenal biopsy while on a gluten-containing diet.

Related: Villous atrophy, Tissue transglutaminase IgA, Dermatitis herpetiformis
Villous atrophy

Histologic flattening and shortening of small-intestinal villi with crypt hyperplasia and increased intraepithelial lymphocytes, the hallmark duodenal lesion of celiac disease and other enteropathies.

Related: Celiac disease, Tissue transglutaminase IgA
Tissue transglutaminase IgA

Serologic test used to screen for celiac disease; high titers are strongly predictive, but IgA deficiency causes false negatives, so total IgA should be measured concurrently.

Related: Celiac disease, Selective IgA deficiency
Dermatitis herpetiformis

Intensely pruritic vesicular rash on extensor surfaces caused by granular IgA deposition in the skin, representing the cutaneous manifestation of gluten-sensitive enteropathy and responding to a gluten-free diet.

Related: Celiac disease
Small intestinal bacterial overgrowth

Excess bacteria in the small bowel causing bloating, diarrhea, and malabsorption, often from motility disorders, strictures, or surgery; diagnosed by breath testing or small-bowel aspirate culture and treated with antibiotics.

Related: Short bowel syndrome, Malabsorption
Short bowel syndrome

Malabsorption resulting from extensive intestinal resection leaving insufficient absorptive surface; management includes parenteral nutrition, antidiarrheal and antisecretory drugs, and intestinal adaptation or lengthening procedures.

Related: Small intestinal bacterial overgrowth, Malabsorption
Malabsorption

Impaired absorption of macronutrients, micronutrients, or both, producing weight loss, steatorrhea, and specific deficiencies depending on the site and mechanism of the defect.

Related: Celiac disease, Small intestinal bacterial overgrowth, Fecal fat quantification
Fecal fat quantification

Laboratory measurement of fat excreted in stool over a collection period, used to confirm steatorrhea when malabsorption is suspected; elevated values indicate fat maldigestion or fat malabsorption.

Related: Malabsorption, Exocrine pancreatic insufficiency
Exocrine pancreatic insufficiency

Inadequate delivery of pancreatic digestive enzymes to the duodenum from chronic pancreatitis, cystic fibrosis, or obstruction, causing steatorrhea and weight loss; treated with pancreatic enzyme replacement taken with meals.

Related: Chronic pancreatitis, Fecal fat quantification, Fecal elastase
Fecal elastase

Pancreas-specific enzyme measured in stool that degrades little during transit; low values indicate exocrine pancreatic insufficiency and are useful when pancreatic function is in question.

Related: Exocrine pancreatic insufficiency, Chronic pancreatitis
Chronic pancreatitis

Progressive fibroinflammatory disease of the pancreas causing pain, exocrine and endocrine insufficiency, and calcifications; most commonly from alcohol use but also genetic, obstructive, and autoimmune causes.

Related: Exocrine pancreatic insufficiency, Pancreatic pseudocyst
Pancreatic pseudocyst

Encapsulated fluid collection rich in pancreatic enzymes that develops after pancreatitis, typically maturing over several weeks; symptomatic or enlarging cysts may require endoscopic or surgical drainage.

Related: Chronic pancreatitis, Acute pancreatitis
Acute pancreatitis

Sudden pancreatic inflammation diagnosed when at least two of characteristic pain, lipase elevation above three times normal, and imaging findings are present; management centers on fluids, analgesia, and early enteral nutrition.

Related: Pancreatic pseudocyst, Endoscopic retrograde cholangiopancreatography
Primary sclerosing cholangitis

Chronic cholestatic liver disease with inflammation and fibrosis of intrahepatic and extrahepatic bile ducts, strongly associated with ulcerative colitis and carrying risk of cholangiocarcinoma and colorectal cancer.

Related: Inflammatory bowel disease, Cholangiocarcinoma, Magnetic resonance cholangiopancreatography
Cholangiocarcinoma

Malignancy of bile duct epithelium, often presenting with painless jaundice and biliary obstruction; risk is increased by primary sclerosing cholangitis and other chronic biliary diseases.

Related: Primary sclerosing cholangitis, Endoscopic retrograde cholangiopancreatography
Endoscopic retrograde cholangiopancreatography

Endoscopic procedure combining duodenoscopy with fluoroscopic imaging and instrumentation of the bile and pancreatic ducts, used to remove stones, relieve obstruction, and obtain biliary tissue.

Related: Cholangiocarcinoma, Acute pancreatitis
Magnetic resonance cholangiopancreatography

Noninvasive magnetic resonance technique producing images of the biliary and pancreatic ducts, useful for detecting stones, strictures, and ductal dilation without the risks of invasive cholangiography.

Related: Primary sclerosing cholangitis, Endoscopic retrograde cholangiopancreatography
Inflammatory bowel disease

Chronic immune-mediated intestinal inflammation encompassing Crohn disease and ulcerative colitis, distinguished by distribution, depth of involvement, and histology; treatment escalates from aminosalicylates to biologics and surgery.

Related: Crohn disease, Ulcerative colitis, Primary sclerosing cholangitis
Crohn disease

Transmural, segmental inflammatory bowel disease that can affect any part of the gastrointestinal tract, often with skip lesions, fistulas, and perianal involvement, and frequently requiring surgery without cure.

Related: Inflammatory bowel disease, Ulcerative colitis, Tumor necrosis factor inhibitor
Ulcerative colitis

Inflammatory bowel disease limited to the colon, beginning in the rectum and extending proximally in a continuous pattern, with bloody diarrhea and an increased risk of colorectal cancer.

Related: Inflammatory bowel disease, Crohn disease, Colorectal cancer screening
Tumor necrosis factor inhibitor

Biologic drug class that neutralizes TNF-alpha to induce and maintain remission in inflammatory bowel disease; requires screening for latent tuberculosis and hepatitis B before initiation.

Related: Crohn disease, Ulcerative colitis
Irritable bowel syndrome

Functional bowel disorder defined by recurrent abdominal pain related to defecation or stool changes, without structural disease, diagnosed by symptom criteria and limited targeted testing rather than exhaustive workup.

Related: Rome criteria, Celiac disease
Rome criteria

Consensus symptom-based diagnostic standards for functional gastrointestinal disorders, including irritable bowel syndrome, used to classify patients and support diagnosis without extensive structural investigation.

Related: Irritable bowel syndrome
Colorectal cancer screening

Testing of average-risk adults to detect colorectal cancer or its precursors before symptoms arise, using stool-based tests or direct visualization such as colonoscopy, with intervals determined by the chosen modality.

Related: Adenomatous polyp, Lynch syndrome, Ulcerative colitis
Adenomatous polyp

Premalignant colorectal lesion arising from dysplastic epithelium; size, number, histology, and completeness of removal determine surveillance intervals after colonoscopy.

Related: Colorectal cancer screening, Endoscopic submucosal dissection
Lynch syndrome

Autosomal dominant hereditary cancer syndrome from mismatch repair gene defects, causing early-onset colorectal and endometrial cancer; identified by tumor testing and confirmed with germline analysis, with intensive surveillance for carriers.

Related: Colorectal cancer screening, Hereditary diffuse gastric cancer
Hereditary diffuse gastric cancer

Autosomal dominant syndrome from CDH1 mutations causing early-onset diffuse gastric cancer and lobular breast cancer; prophylactic gastrectomy is offered after confirmed pathogenic variant and counseling.

Related: Gastric adenocarcinoma, Lynch syndrome
Endoscopic submucosal dissection

Advanced endoscopic technique that removes superficial gastrointestinal neoplasms en bloc by dissecting the submucosal plane, allowing precise pathologic staging and organ preservation in selected lesions.

Related: Adenomatous polyp, Gastric adenocarcinoma, Endoscopic mucosal resection
Endoscopic mucosal resection

Endoscopic removal of superficial mucosal lesions by lifting the tissue and resecting it, sometimes in pieces; used for large polyps and early neoplasia when en bloc dissection is not required.

Related: Endoscopic submucosal dissection, Adenomatous polyp
Esophagogastroduodenoscopy

Upper endoscopic examination of the esophagus, stomach, and duodenum used for diagnosis, biopsy, and therapy; requires attention to sedation, anticoagulation, and procedural indications.

Related: Barrett esophagus, Achalasia, Dysplasia
Dysplasia

Microscopically confirmed neoplastic change of epithelium that stops short of invasive cancer, graded as low or high grade; in Barrett esophagus it guides surveillance intervals and ablative or resective therapy.

Related: Barrett esophagus, Esophageal adenocarcinoma
Esophageal adenocarcinoma

Malignancy arising from Barrett mucosa in the distal esophagus, linked to chronic reflux and obesity; treated with endoscopic resection for superficial disease and esophagectomy or chemoradiation for advanced disease.

Related: Barrett esophagus, Dysplasia
Dysphagia

Sensation of impaired passage of food through the mouth, pharynx, or esophagus; solids alone suggest mechanical obstruction while solids and liquids together suggest a motility disorder.

Related: Achalasia, Peptic stricture, Eosinophilic esophagitis
Proton pump inhibitor

Drug class that irreversibly blocks the gastric proton pump to suppress acid secretion, used for reflux disease, peptic ulcer, and eradication regimens; best taken before meals.

Related: Gastroesophageal reflux disease, Helicobacter pylori infection, Eosinophilic esophagitis
Nonsteroidal anti-inflammatory drug enteropathy

Small-intestinal mucosal injury, including erosions, ulcers, and strictures, caused by nonsteroidal anti-inflammatory drugs and often missed because standard upper endoscopy does not reach the affected bowel.

Related: Peptic ulcer disease, Small intestinal bacterial overgrowth
Selective IgA deficiency

Most common primary immunodeficiency, marked by low serum IgA; it causes falsely negative celiac serology and is associated with giardiasis and other gastrointestinal infections.

Related: Celiac disease, Tissue transglutaminase IgA, Giardiasis
Giardiasis

Small-intestinal protozoal infection from contaminated water causing diarrhea, bloating, and malabsorption; diagnosed by stool antigen or microscopy and treated with tinidazole or metronidazole.

Related: Malabsorption, Selective IgA deficiency